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Home » Recipes » Baking » pumpkin spiced muffins

Pumpkin Pie Spice Sprouted Wheat Muffins with Pepita Crumb Topping

Published November 11, 2020. Last updated November 11, 2020 by Judy Purcell 9 Comments

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Pumpkin Pie Spice Muffins with Pepita Crumb Topping hold the flavors of fall in a single muffin cup.

Your family is gonna love their favorite pumpkin spice wrapped in these healthy whole wheat muffins!

Muffin made with pumpkin topped with oats and pepitas in a muffin tin.
Pumpkin Pie Spice Sprouted Wheat Muffins

October and the pumpkin pie spice reminds us Thanksgiving is just around the corner. More than a day marked on a calendar, each season needs a proper introduction, a special recipe to announce the changing scene with the first bite.

Pumpkin brings a moist crumb to quick breads that lingers for days after baking—the warming spices of cinnamon, clove, ginger, and nutmeg fill our kitchens with a pleasant aroma candles just can’t match. 

Pumpkin spice muffins in green muffin cups in a tin pan.
Muffins fresh from the oven.

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Make Healthy Muffins with Sprouted Whole Wheat Flour

If you have followed Savoring Today for any length of time, you already know about our sprouted wheat baking adventures. Delighted with the bread, bagels, and burger buns we have made with sprouted flour, we’re even more impressed with how well sprouted wheat flour performs in quick breads like pumpkin muffins.

Whole wheat flour can leave baked goods too dry or dense causing muffins and quick breads to crumble. But that was not the case in this recipe and the credit goes to pureed pumpkin, cream cheese, and the use of white whole wheat flour.

NOTE: Read more about why white whole wheat flour is the best choice when baking in our biscuit recipe post.

Cream cheese does wonders for creating a tender crumb in whole wheat baked goods and it works its magic in whole wheat muffins the same way. TIP: You can use up leftover cream cheese to make frosting for some of the muffins too!

A pumpkin muffin with crumb topping broken open on a counter to show the moist crumb.
A light, fluffy pumpkin muffin made with sprouted wheat flour.

Healthier Fats Make Healthier Muffins

Coconut oil and avocado oil have become a primary cooking oils in my kitchen and are especially good for baking. If you’re not partial to the flavor of coconut, avocado oil is a neutral flavored oil that works brilliantly in place of any vegetable oil, but has a healthier composition similar to olive oil.

Muffin swirled with cream cheese frosting.
Muffin with a swirl of cream cheese frosting.

Less Sugar, Perfectly Sweet

Coconut palm sugar is my go-to for replacing refined white or brown sugar. Its flavor is close to brown sugar and works well in most recipes, but it can overpower subtle flavors like pumpkin so we opt for maple syrup or honey as the main sweetener here.

NOTE: Even though we use unrefined sweeteners like maple syrup, honey, and coconut palm sugar, we still reduce the amount of sugar usually found in muffin recipes.

Fingers sprinkling crumb topping onto unbaked pumpkin muffins.
Sprinkling crumb topping on pumpkin pie spice muffins.

Crumb Topping for Breakfast or Cream Cheese Frosting for Dessert

We add a bit of “hippy health nut” as our daughter would say to our crumb topping with toasted pumpkin seeds. If you like the texture and crunch of a crumb topping, you’ll appreciate the pumpkin seeds right away.

Of course, you can skip the crumb and go with a Zen swirl of cream cheese frosting—because some days demand a little fancy.

Topped with crisp, buttery, toasted crumb or frosted and creamy, these Pumpkin Pie Spice Whole Wheat Muffins are perfect for welcoming the fall season.

Step by step collage of how to make pumpkin pie spice muffins.
Pumpkin pie spice muffins in a tin from the oven.
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Pumpkin Pie Spice Sprouted Wheat Muffins

Moist, tender quick bread flavored with pumpkin pie spices, topped with a cinnamon pepita crumb.
Prep Time20 minutes mins
Cook Time16 minutes mins
Total Time36 minutes mins
Course: Baking, Breakfast, Dessert
Cuisine: American
Servings: 18
Author: Judy Purcell
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Ingredients

Crumb Topping:

  • 2 tablespoons pumpkin seeds
  • 1 tablespoon sprouted white whole wheat flour , or white whole wheat flour
  • 1/4 cup old fashioned oats
  • 1 1/2 tablespoons coconut palm sugar
  • 1/2 teaspoon cinnamon
  • 2 tablespoons butter , softened

For The Muffins:

  • 15 ounces canned pumpkin
  • 4 teaspoons pumpkin pie spice
  • 3 tablespoons butter , melted coconut oil, or avocado oil
  • 1/2 cup maple syrup , or honey
  • 1/4 cup coconut palm sugar
  • 4 ounces cream cheese
  • 2 large eggs
  • 2 teaspoons vanilla extract
  • 2 cups sprouted white whole wheat flour
  • 3/4 cup chopped walnuts
  • 1/2 teaspoon baking soda
  • 1 1/2 teaspoon baking powder
  • 3/4 teaspoon sea salt
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Instructions

  • Heat oven to 400°F. Use muffin cups to line muffin tins.

For The Crumb Topping:

  • In a skillet, toast pumpkin seeds over med-high heat until they begin to "pop" and brown and spots (about 3 minutes). Transfer to a small bowl and toss with the oats, coconut palm sugar, flour and cinnamon.
  • Using your fingers, work the butter into the dry ingredients until evenly mixed and a crumbly consistency in reached.

For The Muffins:

  • In a 3-quart saucepan, combine the pumpkin puree and pumpkin pie spice. Cook over medium heat 5 to 6 minutes once it starts to steam, stirring constantly, to evaporate some of the liquid and condense flavor.
  • Remove from heat and mix in butter, maple syrup, coconut palm sugar, and cream cheese until smooth. Whisk in eggs and vanilla.
  • In a mixing bowl, combine the flour, walnuts, baking powder, baking soda, and salt. Add the pumpkin puree to the dry ingredients and stir until flour is just mixed it.
  • Fill muffin tins 3/4 full; sprinkle streusel topping over each one. Bake for 16 minutes or until toothpick inserted in the center, comes out clean.
  • Cool on wire racks in the pans for 5 minutes. Remove muffins from pans and continue to cool on racks until cooled completely. Store loosely covered.

Notes

These muffins freeze well, though the topping will only be crisp just after baking.
How to make your own pumpkin pie spice:
Mix 3 tablespoons ground cinnamon, 2 teaspoons ground ginger, 2 teaspoons ground nutmeg, 1 ½ teaspoons ground allspice and 1 ½ teaspoons ground cloves. 

Nutrition

Calories: 194kcal | Carbohydrates: 23g | Protein: 5g | Fat: 10g | Saturated Fat: 4g | Cholesterol: 36mg | Sodium: 197mg | Potassium: 177mg | Fiber: 3g | Sugar: 9g | Vitamin A: 3896IU | Vitamin C: 1mg | Calcium: 63mg | Iron: 1mg
Learn how to make this and all recipes even easier!Check out our Monthly Meal Prep System!
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Cream Cheese Frosting

Creamy, dreamy frosting for muffins or cupcakes.
Prep Time5 minutes mins
Course: Dessert
Cuisine: French
Servings: 6
Author: Judy Purcell
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Ingredients

  • 4 ounces cream cheese , softened
  • 2 tablespoons butter , softened
  • 2 tablespoons honey or maple syrup , or powdered sugar
  • 1 teaspoon pure vanilla extract
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Instructions

  • In the bowl of a mixer, beat the cream cheese, butter, vanilla, and honey on high for 2-3 minutes, or until smooth. Once the muffins are completely cooled, spread or pipe the frosting on the muffins as desired.
  • To easily pipe the frosting, transfer it into a zipper-type bag and snip a bottom corner off the bag, about 1/4-inch up from the corner. Pipe frosting by squeezing the frosting out of the hole onto the muffin.
  • Apply frosting when the muffins are completely cooled. Enjoy right away or refrigerate until ready to serve.

Notes

Yields enough frosting for 6 muffins if piped, 8 muffins if spread with a spatula.

Nutrition

Calories: 121kcal | Carbohydrates: 7g | Protein: 1g | Fat: 10g | Saturated Fat: 6g | Cholesterol: 31mg | Sodium: 94mg | Potassium: 26mg | Sugar: 6g | Vitamin A: 370IU | Calcium: 19mg | Iron: 1mg
Learn how to make this and all recipes even easier!Check out our Monthly Meal Prep System!

More Healthy Muffin Recipes

  • Blueberry-Carrot Cake Muffins [Grain & Gluten-Free]
  • Orange Cranberry Muffins [Gluten-Free]
  • Sprouted Wheat Banana Walnut Muffins
  • Lemon Poppy Seed Muffins [Gluten-Free]

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Filed Under: Baking, Bread, Breakfast, Recipes Tagged With: Muffins, pumpkin muffins, sprouted wheat flour

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    Rating




  1. Kayla says

    March 8, 2021 at 4:20 pm

    Is this a new version of this recipe? I swear this is my family’s fave pumpkin muffin recipe we always make with that super tasty streusel topping.. but it never had cream cheese in it before? And maybe only used one type of sweetener? I can’t seem to find the one I’m thinking of now, am I going crazy?

    Reply
    • Judy Purcell says

      March 8, 2021 at 5:24 pm

      Hi Kayla, you’re not going crazy, it’s the same recipe, just updated to better answer questions. Sorry if it was confusing! I added the use of maple syrup or honey just because the coconut palm sugar or brown sugar make them darker and I like the pumpkin color to come through. BUT, you can use just the coconut palm or brown sugar if that works best for you. The cream cheese frosting is just another option (super-tasty) in case you want to mix things up, but I agree with you, the streusel topping is soooo good! 🙂

      Reply
  2. mjskitchen says

    November 18, 2020 at 3:21 pm

    5 stars
    One bite and my mouth would be bursting with a mix of textures and wonderful flavors. What scrumptious muffins.

    Reply
  3. kitchenriffs says

    October 7, 2012 at 12:22 pm

    I love the pumpkin seeds in the topping! Really clever idea. Like the whole idea of these muffins, actually – really good stuff. Thanks.

    Reply
  4. Raymund says

    October 7, 2012 at 1:58 am

    Very festive colours! I love this recipe

    Reply
  5. Mary says

    October 5, 2012 at 8:08 am

    These look wonderful and they sound delicious. I’d love to have one with my morning coffee. I hope you are having a wonderful day. Blessings…Mary

    Reply
  6. ChgoJohn says

    October 4, 2012 at 3:55 pm

    These sound so good, Judy, I especially like the streusel topping with pumpkin seeds. A bit of crunch with sweet to counter the moist muffins. Yum!

    Reply
  7. Jed Gray (sportsglutton) says

    October 3, 2012 at 6:12 pm

    Having grown up in Northern California, basically any season is welcoming to any dish…at least for me. So I bake all year around. 🙂 That said I do always feel more pumpkiny during the fall. 😉

    Great sounds alternative recipe!

    Reply
  8. Nancy/SpicieFoodie says

    October 3, 2012 at 3:29 pm

    Now these muffins are a great way of really welcoming autumn. Thanks for sharing, they look delicious!

    Reply
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